pullcounts.vars: Pull variant counts

In veltenlab/mitoClone: Clonal tracking in single-cell RNA-seq data using mitochondrial and somatic mutations

Description

Pull variant counts

Usage

pullcounts.vars(mc.out, vars, cells = NULL, shift = 0)

Arguments

mc.out	A list of base call matrices (one matrix per cell) as produced by baseCountsFromBamList
vars	Character vector of variants to pull, in format 5643G>T
cells	Character vector for cells to select, or NULL if all cells from the input are to be used

Value

A list with two entries, M (count table on the variant allele) and N (count table on the reference allele)

veltenlab/mitoClone documentation built on April 18, 2021, 5:19 a.m.