getCloneLikelihood: mutationCalls accessors

In veltenlab/mitoClone: Clonal tracking in single-cell RNA-seq data using mitochondrial and somatic mutations

Description

Retrieves the full matrix of likelihoods associating single cells with clones

Usage

getCloneLikelihood(mutcall, mainClones = length(mutcall@mut2clone) > 0)

getConfidence(mutcall, mainClones = length(mutcall@mut2clone) > 0)

getMut2Clone(mutcall)

Arguments

mutcall	object of class mutationCalls.
mainClones	Retrieve likelihoods associated with the main Clones. Defaults to TRUE if clusterMetaclones has been run.

Functions

• getCloneLikelihood: Retrieve the most likely clone associate with each cell.

• getConfidence: Retrieve the likelihood of the most likely clone for each cell.

• getMut2Clone: Retrieve the assignment of mutations to clones, once clusterMetaclones has been run.

veltenlab/mitoClone documentation built on April 18, 2021, 5:19 a.m.