plotClones: Plot clonal assignment of single cells

In veltenlab/mitoClone: Clonal tracking in single-cell RNA-seq data using mitochondrial and somatic mutations

Description

Creates a heatmap of single cell mutation calls, clustered using PhISCS.

Usage

plotClones(mutcalls, what = "alleleRatio", show = c(), ...)

Arguments

mutcalls	object of class mutationCalls.
what	One of the following: alleleRatio: The fraction of reads mapping to the mutant allele or ternary: Ternarized mutation status
show	boolean vector specifying for each mutation if it should be plotted on top of the heatmap as metadata; defaults to mutations not used for the clustering !mutcalls@cluster
...	any arguments passed to pheatmap::pheatmap

veltenlab/mitoClone documentation built on April 18, 2021, 5:19 a.m.