quick_cluster: Quick clustering of mutations

In veltenlab/mitoClone: Clonal tracking in single-cell RNA-seq data using mitochondrial and somatic mutations

Description

Performs a quick hierarchical clustering on a object of class mutationCalls. See muta_cluster for an alternative that infers mutational trees and uses sound models of dropout.

Usage

quick_cluster(mutcalls, binarize = F, drop_empty = T, ...)

Arguments

mutcalls	object of class mutationCalls.
binarize	If FALSE, will use raw allele frequencies for the clustering. If TRUE, will use binarized mutation/reference/dropout calls.
...	Parameters passed to pheatmap::pheatmap

Value

The result of running pheatmap::pheatmap

veltenlab/mitoClone documentation built on April 18, 2021, 5:19 a.m.