Files in veltenlab/mitoClone
Clonal tracking in single-cell RNA-seq data using mitochondrial and somatic mutations
DESCRIPTION
NAMESPACE
R/classes.R
R/clustering.R
R/data.R
R/functions_tree.R
R/mutationCalling.R
R/sysdata.rda
README.md
build/vignette.rds
data/M_P1.RData
data/M_P2.RData
data/N_P1.RData
data/N_P2.RData
data/blacklists.RData
data/blacklists_old_backup.RData
inst/doc/calling.R
inst/doc/calling.Rmd
inst/doc/calling.html
inst/doc/callingCohort.R
inst/doc/callingCohort.Rmd
inst/doc/callingCohort.html
inst/doc/clustering.R
inst/doc/clustering.Rmd
inst/doc/clustering.html
inst/doc/denovo.R
inst/doc/denovo.Rmd
inst/doc/denovo.html
inst/extdata/python/PhISCS-I/__init__.py
inst/extdata/python/PhISCS-I/__main__.py
inst/extdata/python/PhISCS-I/faridFunctions.py
inst/extdata/python/PhISCS-I/faridFunctions.pyo
inst/extdata/python/PhISCS-I/helperFunctions.py
inst/extdata/python/PhISCS-I/helperFunctions.pyo
man/baseCountsFromBamList.Rd
man/blacklists.Rd
man/clusterMetaclones.Rd
man/data.Rd
man/getCloneLikelihood.Rd
man/muta_cluster.Rd
man/mutationCalls-class.Rd
man/mutationCallsFromBlacklist.Rd
man/mutationCallsFromCohort.Rd
man/mutationCallsFromMatrix.Rd
man/overwriteMetaclones.Rd
man/plotClones.Rd
man/plotTree.Rd
man/pullcounts.vars.Rd
man/quick_cluster.Rd
vignettes/.gitignore
vignettes/P1.ps
vignettes/P2.ps
vignettes/calling.Rmd
vignettes/callingCohort.Rmd
vignettes/clustering.Rmd
vignettes/denovo.Rmd
