Man pages for veltenlab/mitoClone
Clonal tracking in single-cell RNA-seq data using mitochondrial and somatic mutations
| baseCountsFromBamList | Create a list object from a list of single-cell BAM files... |
| blacklists | Mitochondrial blacklist |
| clusterMetaclones | Cluster mutations into clones - following the tree structure |
| data | Allele Count tables |
| getCloneLikelihood | mutationCalls accessors |
| muta_cluster | Inference of mutational trees by of single cell mutational... |
| mutationCalls-class | mutationCalls class |
| mutationCallsFromBlacklist | Create a mutationCalls object from nucleotide base calls... |
| mutationCallsFromCohort | Create a mutationCalls objects from nucleotide base calls and... |
| mutationCallsFromMatrix | mutationCalls constructor |
| overwriteMetaclones | Manually overwrite clustering of mutations into clones |
| plotClones | Plot clonal assignment of single cells |
| plotTree | Plot clonal tree |
| pullcounts.vars | Pull variant counts |
| quick_cluster | Quick clustering of mutations |
