wstripchart: wstripchart

In vertesy/MarkdownReportsDev: Generate Scientific Figures and Reports Easily

Description

Create and save strip charts as .pdf, in "OutDir". If mdlink = TRUE, it inserts a .pdf and a .png link in the markdown report, set by "path_of_report". The .png version is not created, only the link is put in place, not to overwrite previous versions.

Usage

wstripchart(
  yourlist,
  main = as.character(substitute(yourlist)),
  sub = NULL,
  ylab = "",
  BoxPlotWithMean = FALSE,
  border = 1,
  incrBottMarginBy = 0,
  tilted_text = FALSE,
  metod = "jitter",
  jitter = 0.3,
  pch = 18,
  pchlwd = 1,
  cex.lab = 1,
  pchcex = 1.5,
  bg = "seagreen2",
  colorbyColumn = TRUE,
  col = if (colorbyColumn) 1:length(yourlist) else 1,
  savefile = unless.specified("b.save.wplots"),
  w = unless.specified("b.defSize", 7),
  h = w,
  mdlink = ww.set.mdlink(),
  PNG = unless.specified("b.usepng", F),
  ...
)

Arguments

yourlist	Input list to be plotted.
main	Title of the plot (main parameter) and also the name of the file.
sub	Subtitle below the plot.
ylab	Y axis label
BoxPlotWithMean	Display the mean instead of the median in a boxplot. This is non-standard use of a boxplot, report it.
border	An optional vector of colors for the outlines of the boxplots. The values in border are recycled if the length of border is less than the number of plots.
incrBottMarginBy	Increase the blank space at the bottom of the plot. Use if labels do not fit on the plot.
tilted_text	Use 45 degree x-labels if TRUE. Useful for long, but not too many labels.
metod	Method for displaying data points to avoid overlap; either"jitter" or "stack". See stripchart().
jitter	The amount of horizontal scatter added to the individual data points (to avoid overlaps).
pch	Define the symbol for each data point. A number 0-25 or any string between ""-s.
pchlwd	Define the outline width of the symbol for each data point.
cex.lab	Cex for labels
pchcex	Define the size of the symbol for each data point.
bg	Background color.
colorbyColumn	Color each box by a simple background color? TRUE by default.
col	Color of the plot.
savefile	Save plot as pdf in OutDir, TRUE by default.
w	Width of the saved pdf image, in inches.
h	Height of the saved pdf image, in inches.
mdlink	Insert a .pdf and a .png image link in the markdown report, set by "path_of_report".
PNG	Set to true if you want to save the plot as PNG instead of the default PDF.
...	Pass any other parameter of the corresponding plotting function(most of them should work).

Examples

try.dev.off(); my.ls = list(A = rnorm(10), B = rnorm(10), C = rnorm(10));
wstripchart (yourlist = my.ls)

vertesy/MarkdownReportsDev documentation built on Nov. 15, 2021, 9:59 a.m.