subsample_association_analysis: Cross-validated cluster association analysis

In vittoriofortino84/COPS: Clustering algorithms for Omics-driven Patient Stratification

Cross-validated cluster association analysis

Description

Runs cluster_associations in parallel.

Usage

subsample_association_analysis(
  clusters,
  association_data,
  by = c("run", "fold", "datname", "drname", "k", "m"),
  parallel = 1,
  ...
)

Arguments

clusters	A data.table or data.frame with clustering information.
association_data	A data.frame with association variables (categoric or numeric).
by	Column names that identify a single clustering result.
parallel	Number of parallel threads.
...	Extra arguments are ignored.

Details

Assumes that a parallel backend has been registered for foreach.

Value

data.table containing association variables

vittoriofortino84/COPS documentation built on Jan. 28, 2025, 3:16 p.m.