R/pso-data.R

In vittoriofortino84/COPS: Clustering algorithms for Omics-driven Patient Stratification

#' Psoriasis expression data
#' 
#' RNA-Seq raw counts
#' 
#' @docType data
#' 
#' @usage data(psoriasis_rnaseq_example)
#' 
#' @format An object of class \code{list}
#' 
#' @keywords datasets
"psoriasis_rnaseq_example"
#' Psoriasis clinical data
#' 
#' Study, patient id, anatomical site when available
#' 
#' @docType data
#' 
#' @usage data(psoriasis_clinical_example)
#' 
#' @format An object of class \code{list}
#' 
#' @keywords datasets
"psoriasis_clinical_example"
#' Psoriasis example genes
#' 
#' ENSEMBL gene ids
#' 
#' @docType data
#' 
#' @usage data(psoriasis_degs_example)
#' 
#' @format An object of class \code{character}
#' 
#' @keywords datasets
"psoriasis_degs_example"
#' Normalized psoriasis expression data
#' 
#' RNA-Seq normalized counts
#' 
#' @docType data
#' 
#' @usage data(psoriasis_rnaseq_normalized)
#' 
#' @format An object of class \code{matrix}
#' 
#' @keywords datasets
"psoriasis_rnaseq_normalized"
#' Batch corrected psoriasis expression data
#' 
#' RNA-Seq batch-corrected and normalized counts
#' 
#' @docType data
#' 
#' @usage data(psoriasis_rnaseq_corrected)
#' 
#' @format An object of class \code{matrix}
#' 
#' @keywords datasets
"psoriasis_rnaseq_corrected"
#' Meta-gene features for psoriasis expression data
#' 
#' WGCNA module eigen-genes for psoriasis RNA-Seq data
#' 
#' @docType data
#' 
#' @usage data(psoriasis_example_MEs)
#' 
#' @format An object of class \code{matrix}
#' 
#' @keywords datasets
"psoriasis_example_MEs"