Files in vjcitn/GenomicRangesGHA

Representation and manipulation of genomic intervals; demo with github actions binary generation

R/DelegatingGenomicRanges-class.R R/GNCList-class.R R/GPos-class.R R/GRanges-class.R R/GRangesFactor-class.R R/GRangesList-class.R R/GenomicRanges-class.R R/GenomicRanges-comparison.R R/GenomicRangesList-class.R R/RangedData-methods.R R/absoluteRanges.R R/constraint.R R/coverage-methods.R R/findOverlaps-methods.R R/genomic-range-squeezers.R R/genomicvars.R R/inter-range-methods.R R/intra-range-methods.R R/makeGRangesFromDataFrame.R R/makeGRangesListFromDataFrame.R R/nearest-methods.R R/normarg-utils.R R/phicoef.R R/setops-methods.R R/strand-utils.R R/tile-methods.R R/tileGenome.R R/transcript-utils.R R/utils.R R/zzz.R README.md inst/scripts/timing_overlaps.R inst/slides/GRanges_and_GRangesList_slides.pdf inst/slides/Ten_things_slides.pdf inst/unitTests/test_GNCList-class.R inst/unitTests/test_GRanges-class.R inst/unitTests/test_GRangesList-class.R inst/unitTests/test_GenomicRanges-comparison.R inst/unitTests/test_coverage-methods.R inst/unitTests/test_findOverlaps-methods.R inst/unitTests/test_inter-range-methods.R inst/unitTests/test_intra-range-methods.R inst/unitTests/test_makeGRangesFromDataFrame.R inst/unitTests/test_makeGRangesListFromDataFrame.R inst/unitTests/test_nearest-methods.R inst/unitTests/test_precede_follow.R inst/unitTests/test_setops-methods.R inst/unitTests/test_slides.R inst/unitTests/test_ten_things.R man/DelegatingGenomicRanges-class.Rd man/GNCList-class.Rd man/GPos-class.Rd man/GRanges-class.Rd man/GRangesFactor-class.Rd man/GRangesList-class.Rd man/GenomicRanges-comparison.Rd man/GenomicRangesList-class.Rd man/absoluteRanges.Rd man/constraint.Rd man/coverage-methods.Rd man/findOverlaps-methods.Rd man/genomic-range-squeezers.Rd man/genomicvars.Rd man/inter-range-methods.Rd man/intra-range-methods.Rd man/makeGRangesFromDataFrame.Rd man/makeGRangesListFromDataFrame.Rd man/nearest-methods.Rd man/phicoef.Rd man/setops-methods.Rd man/strand-utils.Rd man/tile-methods.Rd man/tileGenome.Rd tests/run_unitTests.R tic.R vignettes/ExtendingGenomicRanges.R vignettes/ExtendingGenomicRanges.Rmd vignettes/GRanges_and_GRangesList_slides.R vignettes/GenomicRangesHOWTOs.R vignettes/GenomicRangesHOWTOs.Rmd vignettes/GenomicRangesIntroduction.R vignettes/GenomicRangesIntroduction.Rmd vignettes/Ten_things_slides.R