vmikk/metagMisc: Miscellaneous functions for metagenomic analysis
Version 0.0.3

metagMisc package contains miscellaneous functions for metagenomic analysis, including data transformations, several parsers (for USERCH UC-format; BLAST, SINA and STAMPA outputs, etc.), taxonomy handlers (SILVA, QIIME, AMPTk), phyloseq-shortcuts (multiple rarefaction, phyloseq splitting and exporting), and DADA2-shortcuts (error rate estimation on the subset of data, export of denoised amplicons in fasta).

Getting started

Package details

Maintainer
LicenseMIT
Version0.0.3
Package repositoryView on GitHub
Installation Install the latest version of this package by entering the following in R:
install.packages("devtools")
library(devtools)
install_github("vmikk/metagMisc")
vmikk/metagMisc documentation built on Dec. 17, 2017, 6:22 p.m.