phyloseq_filter_top_taxa: Extract the most abundant taxa.
In vmikk/metagMisc: Miscellaneous functions for metagenomic analysis
View source: R/phyloseq_filter.R
phyloseq_filter_top_taxa R Documentation
Extract the most abundant taxa.
Description
Extract the most abundant taxa.
Usage
phyloseq_filter_top_taxa(physeq, perc = 10, n = NULL)
Arguments
physeq
A phyloseq-class object
perc
Percentage of the most abundant taxa to retain
n
Number of the most abundant taxa to retain (this argument will override perc argument)
Value
Phyloseq object with a filtered data.
vmikk/metagMisc documentation built on April 13, 2025, 7:54 p.m.
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View source: R/phyloseq_filter.R
| phyloseq_filter_top_taxa | R Documentation |
Extract the most abundant taxa.
Description
Extract the most abundant taxa.
Usage
phyloseq_filter_top_taxa(physeq, perc = 10, n = NULL)
Arguments
physeq |
A phyloseq-class object |
perc |
Percentage of the most abundant taxa to retain |
n |
Number of the most abundant taxa to retain (this argument will override perc argument) |
Value
Phyloseq object with a filtered data.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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