phyloseq_filter_top_taxa_range: Check the range of the top-taxa filtering values to determine...
In vmikk/metagMisc: Miscellaneous functions for metagenomic analysis
View source: R/phyloseq_filter.R
phyloseq_filter_top_taxa_range R Documentation
Check the range of the top-taxa filtering values to determine the optimal threshold.
Description
This function performs taxa filtering by retaining the most abundant taxa.
A range of abundance percentages (5 - 95%) will be explored.
Usage
phyloseq_filter_top_taxa_range(physeq, show_plot = TRUE)
Arguments
physeq
A phyloseq-class object
show_plot
Logical; if TRUE, shows the plot on screen
Value
ggplot-object.
vmikk/metagMisc documentation built on Feb. 14, 2024, 2:29 a.m.
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View source: R/phyloseq_filter.R
| phyloseq_filter_top_taxa_range | R Documentation |
Check the range of the top-taxa filtering values to determine the optimal threshold.
Description
This function performs taxa filtering by retaining the most abundant taxa. A range of abundance percentages (5 - 95%) will be explored.
Usage
phyloseq_filter_top_taxa_range(physeq, show_plot = TRUE)
Arguments
physeq |
A phyloseq-class object |
show_plot |
Logical; if TRUE, shows the plot on screen |
Value
ggplot-object.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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