bubble_plot: Bubble plot

In vmikk/metagMisc: Miscellaneous functions for metagenomic analysis

Bubble plot

Description

Bubble plot

Usage

bubble_plot(x, transp = 0.9, circ = 16, add.dendro = FALSE, ...)

Arguments

x	Data frame with data (columns = samples, rows = species abundance, rownames = species names)
transp	Transparency level (0-1)
circ	Circle scale factor
add.dendro	Logical, adds dendrogram for samples
...

Value

Invisibly returns a plot ('ggplot' class).

Examples

x <- as.data.frame(matrix(runif(n = 100, min = 0, max = 100), nrow = 10))
rownames(x) <- paste("sp", 1:nrow(x), sep="")
bubble_plot(x, add.dendro=F)
bubble_plot(x, add.dendro=T)

vmikk/metagMisc documentation built on Feb. 14, 2024, 2:29 a.m.