parse_funguild: Parse FUNGuild database

In vmikk/metagMisc: Miscellaneous functions for metagenomic analysis

Parse FUNGuild database

Description

FUNGuild = Fungi + fUNctional + Guild

Usage

parse_funguild(url = "http://www.stbates.org/funguild_db.php", tax_name = TRUE)

Arguments

url	Funguild databse link
tax_name	Logical, change numeral taxonomic coding with the corresponding taxonomic levels

Value

Data frame containing the entire FUNGuild database.

References

Nguyen NH, Song Z, Bates ST, Branco S, Tedersoo L, Menke J, Schilling JS, Kennedy PG. 2016. FUNGuild: An open annotation tool for parsing fungal community datasets by ecological guild. Fungal Ecology 20:241–248. https://github.com/UMNFuN/FUNGuild

Examples

fg <- parse_funguild()
attr(fg, "DownloadDate")  # Check when the database was downloaded

vmikk/metagMisc documentation built on Feb. 14, 2024, 2:29 a.m.