genotypingErrorMatrix: Create a genotyping error matrix.
In vsbuffalo/ProgenyArray: Some statistical genetics for progeny array experiments
Description
Returns a matrix of transition probabilities for a given genotype given error.
Usage
1
genotypingErrorMatrix(ehet = 0.6, ehom = 0.1)
Arguments
ehet
the probability that a heterozygous genotype is incorrect
ehom
the probability that a homozygous genotype is incorrect
This function creates a matrix of the form:
[1-e, e/2, e/2,
E/2, 1-E, E/2,
e/2, e/2, 1-e]
where E is the probability the heterozygous genotype call is incorrect, and
e is the probability that the homozygous genotypes call is incorrect.
vsbuffalo/ProgenyArray documentation built on May 3, 2019, 6:41 p.m.
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Description
Returns a matrix of transition probabilities for a given genotype given error.
Usage
1 | genotypingErrorMatrix(ehet = 0.6, ehom = 0.1)
|
Arguments
ehet |
the probability that a heterozygous genotype is incorrect |
ehom |
the probability that a homozygous genotype is incorrect This function creates a matrix of the form: [1-e, e/2, e/2, E/2, 1-E, E/2, e/2, e/2, 1-e] where E is the probability the heterozygous genotype call is incorrect, and e is the probability that the homozygous genotypes call is incorrect. |
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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