inferParents-ProgenyArray-method: Infer parents of all progeny in a ProgenyArray
In vsbuffalo/ProgenyArray: Some statistical genetics for progeny array experiments
Description
inferParents() infers the parents of all ProgenyArray by calculating the
likelihood of all possible parents. If there are P parents, this involves
calculating P(P - 1)/2 likelihoods.
Usage
1
2
## S4 method for signature 'ProgenyArray'
inferParents(x, ehet, ehom, verbose = TRUE)
Arguments
x
a ProgenyArray object
ehet
heterozygous error rate
ehom
homozygous error rate
verbose
logical indicating whether to use verbose output
vsbuffalo/ProgenyArray documentation built on May 3, 2019, 6:41 p.m.
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Description
inferParents() infers the parents of all ProgenyArray by calculating the likelihood of all possible parents. If there are P parents, this involves calculating P(P - 1)/2 likelihoods.
Usage
1 2 | ## S4 method for signature 'ProgenyArray'
inferParents(x, ehet, ehom, verbose = TRUE)
|
Arguments
x |
a ProgenyArray object |
ehet |
heterozygous error rate |
ehom |
homozygous error rate |
verbose |
logical indicating whether to use verbose output |
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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