inferParents-ProgenyArray-method: Infer parents of all progeny in a ProgenyArray

Description Usage Arguments

Description

inferParents() infers the parents of all ProgenyArray by calculating the likelihood of all possible parents. If there are P parents, this involves calculating P(P - 1)/2 likelihoods.

Usage

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## S4 method for signature 'ProgenyArray'
inferParents(x, ehet, ehom, verbose = TRUE)

Arguments

x

a ProgenyArray object

ehet

heterozygous error rate

ehom

homozygous error rate

verbose

logical indicating whether to use verbose output


vsbuffalo/ProgenyArray documentation built on May 3, 2019, 6:41 p.m.