Phase all Parents in a ProgenyArray object
1 2 3 | ## S4 method for signature 'ProgenyArray'
phaseParents(x, tiles, ehet = 0.8, ehom = 0.1,
na_thresh = 0.8, min_child = 8, verbose = TRUE)
|
x |
a ProgenyArray object |
tiles |
a PhasingTiles object |
ehet |
heterozygous error rate |
ehom |
homozygous error rate |
na_thresh |
how much missingness to tolerate before pruning individual |
min_child |
minimum number of children to include a parent for phasing |
verbose |
report status messages |
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