phaseParents-ProgenyArray-method: Phase all Parents in a ProgenyArray object

Description Usage Arguments

Description

Phase all Parents in a ProgenyArray object

Usage

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## S4 method for signature 'ProgenyArray'
phaseParents(x, tiles, ehet = 0.8, ehom = 0.1,
  na_thresh = 0.8, min_child = 8, verbose = TRUE)

Arguments

x

a ProgenyArray object

tiles

a PhasingTiles object

ehet

heterozygous error rate

ehom

homozygous error rate

na_thresh

how much missingness to tolerate before pruning individual

min_child

minimum number of children to include a parent for phasing

verbose

report status messages


vsbuffalo/ProgenyArray documentation built on May 3, 2019, 6:41 p.m.