compareModels.Fits.AggCatchData: Compare fits to aggregated catch data (abundance or biomass)...

In wStockhausen/rTCSAM2015: A set of tools to set up input for, and interact with output from, a TCSAM2015 model run, as well as to compare TCSAM2015 and rsimTCSAM runs.

Description

Function to compare fits to aggregated catch data (abundance or biomass) for TCSAM2015 model runs.

Usage

compareModels.Fits.AggCatchData(mdfr, fleets = NULL, catch.types = NULL,
  logscale = FALSE, xlab = "Year", ylab = "", xlim = NULL,
  ylim = NULL, ggtheme = ggplot2::theme_grey(), showPlot = TRUE,
  pdf = NULL, width = 8, height = 6)

Arguments

mdfr	- dataframe from call to getMDFR.FitsForFleets(...)
fleets	- fleets to plot [NULL for all]
catch.types	- catch types ('index.catch', retained.catch', etc) to plot [NULL for all]
logscale	- flag (T/F) to plot on log scale
xlab	- x axis label
ylab	- y axis label
xlim	- x axis limits
ylim	- y axis limits
ggtheme	- graphical theme for plot
showPlot	- flag to show/print plots immediately
pdf	- name of pdf file to record plot output to
width	- pdf page width (in inches)
height	- pdf page width (in inches)

Details

Uses reshape2::dcast(...). Plots are produced by fleet and faceted by sex, maturity, shell condition, and catch type.

Value

list of ggplot2 objects, named by fleet

wStockhausen/rTCSAM2015 documentation built on May 3, 2019, 7:14 p.m.