compareModels.ZScores.NatZData: Compare z-scores from fits to size compositions from catch...

In wStockhausen/rTCSAM2015: A set of tools to set up input for, and interact with output from, a TCSAM2015 model run, as well as to compare TCSAM2015 and rsimTCSAM runs.

Description

Function to compare z-scores from fits to size compositions from catch data for TCSAM2015 model runs.

Usage

compareModels.ZScores.NatZData(mdfr, fleets = NULL, catch.types = NULL,
  variable = "pearsons", nrow = 4, ncol = 3, xlab = "Size (mm CW)",
  ylab = variable, xlim = NULL, ylim = NULL,
  ggtheme = ggplot2::theme_grey(), showPlot = TRUE, pdf = NULL,
  width = 8, height = 6, verbose = FALSE)

Arguments

mdfr	- dataframe from call to getMDFR.ZScoresForFleets(...) for n.at.z data
fleets	- fleets to plot [NULL for all]
catch.types	- catch types ('index.catch', retained.catch', etc) to plot [NULL for all]
variable	- variable to plot ("pearsons" or "nlls")
nrow	- number of rows per page for output plots
ncol	- number of columns per page for output plots
xlab	- x axis label
ylab	- y axis label
xlim	- x axis limits
ylim	- y axis limits
ggtheme	- graphical theme for plot
showPlot	- flag to show/print plots immediately
pdf	- name of pdf file to record plot output to
width	- pdf page width (in inches)
height	- pdf page width (in inches)
verbose	- flag (T/F) to print diagnostic output

Details

Plots are produced by fleet, catch type, sex, maturity state, and shell condition and faceted by year.

Value

recursive list of lists of ggplot2 objects, named by fleet, catch type, sex, maturity state, and shell condition

wStockhausen/rTCSAM2015 documentation built on May 3, 2019, 7:14 p.m.