getObjFunValues.CatchData: Get catch data components in the objective function as a...

In wStockhausen/rTCSAM2015: A set of tools to set up input for, and interact with output from, a TCSAM2015 model run, as well as to compare TCSAM2015 and rsimTCSAM runs.

Description

Function to get catch data components in the objective function as a melted dataframe.

Usage

getObjFunValues.CatchData(catchData, catch.type = "total.catch",
  verbose = FALSE)

Arguments

catchData	- a list object reflecting a catch data source's contributions to the objective function
catch.type	- type of catch data ('total.catch','retained.catch','discard.catch')
verbose	- flag (T/F) to print diagnostic info

Details

The returned dataframe has columns named "catch.type", "data.type", "fit.type", "nll.type", "year", "sex", "maturity", "shell_condition", "variable", "value"

The "variable" column indicates whether the "value" is a weight ('wgt'), negative log-likelihood ('nll'), or objective function value ('objfun').

Value

a melted dataframe

wStockhausen/rTCSAM2015 documentation built on May 3, 2019, 7:14 p.m.