Files in wStockhausen/rsimTCSAM

Simulation model for testing TCSAM2013 and TCSAM02 models.

R/ErrorMessages.R R/SelectivityFunctions.R R/addError.R R/calcEquilibriumSizeComp.TM.R R/calcFishingMortalities.R R/calcInitSizeComps.R R/calcModelProcesses.R R/calcNatZ.Fisheries.R R/calcNatZ.R R/calcNatZ.Surveys.R R/calcNaturalMortality.R R/calcPrM2M.R R/calcPrMolt.R R/calcRecruitment.R R/calcSelFcns.R R/calcStateTransitionMatrices.R R/calcSurveyCatchabilities.R R/calcWatZ.R R/calcZTM.R R/checkKeyword.R R/compareModels.PopQuants.R R/compareSizeCompsGG.R R/dimArray.R R/getMDFR.Fisheries.CatchAbundance.R R/getMDFR.Fisheries.CatchBiomass.R R/getMDFR.Fisheries.SelFcns.R R/getMDFR.Pop.Abundance.R R/getMDFR.Pop.Biomass.R R/getMDFR.Pop.GrowthMatrices.R R/getMDFR.Pop.MeanGrowth.R R/getMDFR.Pop.NaturalMortality.R R/getMDFR.Pop.PrM2M.R R/getMDFR.Pop.Quantities.R R/getMDFR.Pop.RecSizeDistribution.R R/getMDFR.Pop.SexRatio.R R/getMDFR.R R/getMDFR.Surveys.Abundance.R R/getMDFR.Surveys.Biomass.R R/getMDFR.Surveys.SelFcns.R R/getObj.R R/getResLst.R R/midpoints.R R/parseMC.Dims.R R/parseMC.Fisheries.R R/parseMC.Growth.R R/parseMC.NaturalMortality.R R/parseMC.OutputInfo.R R/parseMC.PrM2M.R R/parseMC.Recruitment.R R/parseMC.SelFcns.R R/parseMC.Surveys.R R/parseMC.WatZ.R R/readModelConfiguration.TCSAM.R R/reformatTimeBlocks.R R/removeImmOS.R R/runModel.R R/runSim.TCSAM.R R/writeSim.TCSAM02.Fisheries.R R/writeSim.TCSAM02.R R/writeSim.TCSAM02.Surveys.R R/writeSim.TCSAM2013.Fisheries.R R/writeSim.TCSAM2013.R R/writeSim.TCSAM2013.Surveys.R README.md man/addError.Rd man/asclogistic.Rd man/asclogistic5095.Rd man/asclogistic50D95.Rd man/calcEquilibriumSizeComp.TM.Rd man/calcFishingMortalities.Rd man/calcInitSizeComps.Rd man/calcModelProcesses.Rd man/calcNatZ.Fisheries.Rd man/calcNatZ.Rd man/calcNatZ.Surveys.Rd man/calcNaturalMortality.Rd man/calcPrM2M.Rd man/calcPrMolt.Rd man/calcRatZ.All.Rd man/calcRatZ.Rd man/calcRecruitment.Rd man/calcSelFcns.Rd man/calcSelectivity.Rd man/calcStateTransitionMatrices.Rd man/calcSurveyCatchabilities.Rd man/calcWatZ.Rd man/calcZTM.Rd man/checkKeyword.Rd man/compareModels.PopQuants.Rd man/compareSizeCompsGG.Rd man/dbllogistic.Rd man/dbllogistic5095.Rd man/dimArray.Rd man/getMDFR.Fisheries.CatchAbundance.Rd man/getMDFR.Fisheries.CatchBiomass.Rd man/getMDFR.Fisheries.SelFcns.Rd man/getMDFR.Pop.Abundance.Rd man/getMDFR.Pop.Biomass.Rd man/getMDFR.Pop.GrowthMatrices.Rd man/getMDFR.Pop.MeanGrowth.Rd man/getMDFR.Pop.NaturalMortality.Rd man/getMDFR.Pop.PrM2M.Rd man/getMDFR.Pop.Quantities.Rd man/getMDFR.Pop.RecSizeDistribution.Rd man/getMDFR.Pop.SexRatio.Rd man/getMDFR.Rd man/getMDFR.Surveys.Abundance.Rd man/getMDFR.Surveys.Biomass.Rd man/getMDFR.Surveys.SelFcns.Rd man/getObj.Rd man/getResLst.Rd man/midpoints.Rd man/parseMC.Dims.Rd man/parseMC.Fisheries.Rd man/parseMC.Growth.Rd man/parseMC.NaturalMortality.Rd man/parseMC.OILine.Rd man/parseMC.OutputInfo.Rd man/parseMC.PrM2M.Rd man/parseMC.Recruitment.Rd man/parseMC.SelFcns.Rd man/parseMC.Surveys.Rd man/parseMC.WatZ.Rd man/plogis.Rd man/readModelConfiguration.TCSAM.Rd man/reformatTimeBlocks.Rd man/removeImmOS.Rd man/runModel.Rd man/runOneYear.TM.Rd man/runSim.TCSAM.Rd man/throwModelTypeError.Rd man/writeSim.TCSAM02.Fisheries.Rd man/writeSim.TCSAM02.Rd man/writeSim.TCSAM02.Surveys.Rd man/writeSim.TCSAM2013.Fisheries.Rd man/writeSim.TCSAM2013.Rd man/writeSim.TCSAM2013.Surveys.Rd