getMDFR.Fisheries.CatchAbundance: Get fishery catch abundance time series from model results...

In wStockhausen/rsimTCSAM: Simulation model for testing TCSAM2013 and TCSAM02 models.

Description

Function to get fishery catch abundance time series from model results from rsimTCSAM model runs as a dataframe.

Usage

getMDFR.Fisheries.CatchAbundance(rsims, category = c("captured", "discarded",
  "retained", "discard mortality", "total mortality", "index"), cast = "y+x",
  verbose = FALSE)

Arguments

rsims	- single rsimTCSAM.rep object, rsimTCSAM.resLst object, or named list of the latter
category	- 'captured','discarded','retained', 'discard mortality', 'total mortality', or 'index'
cast	- casting formula for excluding y,x,m,s,z factor levels from an average-at-size across unspecified factors
verbose	- flag (T/F) to print debug info

Details

Extracts the estimated fishery abundance time series.

Value

dataframe in canonical format

wStockhausen/rsimTCSAM documentation built on May 3, 2019, 7:35 p.m.