calcStateTransitionMatrices: Calculate the state transition matrices for a single sex.

In wStockhausen/rsimTCSAM: Simulation model for testing TCSAM2013 and TCSAM02 models.

Description

Function to calculate the state transition matrices for a single sex.

Usage

calcStateTransitionMatrices(mc, S1_msz, P_sz, Th_sz, T_szz, S2_msz)

Arguments

mc	- model configuration list object
S1_msz	- 3d array of pr(survival) from start of year to mating/molting by maturity state, shell condition, size class
P_sz	- 2d array of the probability by size class of molting for immature crab, by shell condition
Th_sz	- 2d array with pr(molt to maturity|size, molt) for immature crab by shell condition
T_szz	- 3d array with size transition matrix for growth by immature crab by shell condition
S2_msz	- 3d array of pr(survival) from mating/molting to end of year by maturity state, shell condition, size class

Value

list with state transition matrices as named elements: A : imm, new -> imm, new B : imm, old -> imm, new C : imm, new -> imm, old D : imm, old -> imm, old E : imm, new -> mat, new F : imm, old -> mat, new G : mat, new -> mat, old H : mat, old -> mat, old

wStockhausen/rsimTCSAM documentation built on May 3, 2019, 7:35 p.m.