calcFishingMortalities: Calculate size-specific fishery capture and retention rates

In wStockhausen/rsimTCSAM: Simulation model for testing TCSAM2013 and TCSAM02 models.

Description

Function to calculate size-specific fishery capture and retention rates.

Usage

calcFishingMortalities(mc, sel_cz, showPlot = TRUE)

Arguments

mc	- model configuration object
sel_cz	- selectivity functions
showPlot	- flag to show plots

Details

None.

Value

list with the following elements sel_fyxmsz - size-specific selectivity ret_fyxmsz - size-specific retention devs_fy - ln-scale deviations in annual capture rates hm_fxy - handling mortality rate cpF_fyxms - fully-selected fishing capture rate cpF_fyxmsz - size-specific fishing capture rate tmF_fyxmsz - size-specific fishing mortality rate rmF_fyxmsz - size-specific retention mortality rate dmF_fyxmsz - size-specific discard mortality rate tmF_yxmsz - total fishing mortality across all fisheries

wStockhausen/rsimTCSAM documentation built on May 3, 2019, 7:35 p.m.