calcNatZ.Fisheries: Calculate fishery catches, mortality at size through the...

In wStockhausen/rsimTCSAM: Simulation model for testing TCSAM2013 and TCSAM02 models.

Description

Function to calculate fishery catches, mortality at size through the model time interval

Usage

calcNatZ.Fisheries(mc, mp, N_yxmsz, showPlot = TRUE)

Arguments

mc	- model configuration list object
mp	- model processes list object
N_yxmsz	- numbers at size array
showPlot	- flag to show plot.

Details

None.

Value

list with the following elements: cpN_fyxms: 5-d array of fishery catches (NOT MORTALITY) by fishery/year/sex/maturity/shell condition cpB_fyxms: 5-d array of fishery catches (NOT MORTALITY) by fishery/year/sex/maturity/shell condition cpN_fyxmsz: 6-d array of fishery catches (NOT MORTALITY) by fishery/year/sex/maturity/shell condition/size cpB_fyxmsz: 6-d array of fishery catches (NOT MORTALITY) by fishery/year/sex/maturity/shell condition/size dsN_fyxms: 5-d array of fishery discard numbers (NOT MORTALITY) by fishery/year/sex/maturity/shell condition dsB_fyxms: 5-d array of fishery discard biomass (NOT MORTALITY) by fishery/year/sex/maturity/shell condition dsN_fyxmsz: 6-d array of fishery discard numbers (NOT MORTALITY) by fishery/year/sex/maturity/shell condition/size dsB_fyxmsz: 6-d array of fishery discard numbers (NOT MORTALITY) by fishery/year/sex/maturity/shell condition/size tmN_fyxms: 5-d array of total fishery mortality as numbers by fishery/year/sex/maturity/shell condition tmB_fyxms: 5-d array of total fishery mortality as biomass by fishery/year/sex/maturity/shell condition tmN_fyxmsz: 6-d array of total fishery mortality as numbers by fishery/year/sex/maturity/shell condition/size tmB_fyxmsz: 6-d array of total fishery mortality as numbers by fishery/year/sex/maturity/shell condition/size rmN_fyxms: 5-d array of retention mortality as numbers by fishery/year/sex/maturity/shell condition rmB_fyxms: 5-d array of retention mortality as biomass by fishery/year/sex/maturity/shell condition rmN_fyxmsz: 6-d array of retention mortality by year/sex/maturity/shell condition/size rmB_fyxmsz: 6-d array of retention mortality by year/sex/maturity/shell condition/size dmN_fyxms: 5-d array of discard mortality as numbers by fishery/year/sex/maturity/shell condition dmB_fyxms: 5-d array of discard mortality as biomass by fishery/year/sex/maturity/shell condition dmN_fyxmsz: 6-d array of discard mortality by fishery/year/sex/maturity/shell condition/size dmB_fyxmsz: 6-d array of discard mortality by fishery/year/sex/maturity/shell condition/size

wStockhausen/rsimTCSAM documentation built on May 3, 2019, 7:35 p.m.