Man pages for wStockhausen/wtsDisMELSConn
Functions for dealing with DisMELS IBM model output, including calculating and analyzing connectivity matrices
| aggregateCMs | Aggregate dataframe with connectivity matrices according to... |
| calcAvgCM | Calculate an "average" connectivity matrix |
| calcCM | Calculate a connectivity matrix for one DisMELS model run |
| calcCM.orig | Calculate a connectivity matrix for one DisMELS model run |
| calcCMs | Calculate connectivity matrices for a set of DisMELS model... |
| calcCMs.orig | Calculate connectivity matrices for a set of DisMELS model... |
| calcIC | Calculate individual connectivity for one DisMELS model run |
| calcLRs.RbyI | Calculate linear regressions between recruitment and index... |
| calcLRs.YbyXs | Calculate linear regressions for time series in Y as function... |
| calcLRs.YsByX | Calculate linear regressions for time series in Y as function... |
| calcLRs.YsByXs | Calculate linear regressions for time series in Y as function... |
| calcOverlapCoefficient.CMs | UNFINISHED: Calculate the overlap coefficient (OC) time... |
| concatAnnualTables | Concatenate annual tables (connectivity matrices, individual... |
| concatEIs | Concatenate files with environmental indices |
| convertLabelToExpr | Convert plot with newline characters to plotmath |
| doAnalysis.FractionRecruitingBySource | Calculate time series of the total fraction recruiting by... |
| extractIndivIDs | Extract unique IDs for individuals from a DisMELS model run |
| extractIndivs | Extract tracks of individuals from a DisMELS model run |
| extractIndivs.MultipleRuns | Extracts and re-orders a series of DisMELS model results... |
| extractResultsByLHS | Extract results from DisMELS model run to individual files by... |
| extractResultsByLHS.MultipleRuns | Extracts and re-exports a series of DisMELS model results... |
| getLifeStageInfo.ATF | Get a list that defines life stage info for the DisMELS... |
| getLifeStageInfo.POP | Get a list that defines life stage info for the DisMELS POP... |
| getStdVars | Get standard variable names for DisMELS output |
| plotCM | Plot a connectivity matrix |
| plotCM.dataframe | Plot a connectivity matrix from a dataframe |
| plotCM.GG | Plot connectivity matrices using ggplot2 |
| plotCM.matrix | Plot a connectivity matrix from a matrix representation |
| plotCMs | Plot a set of connectivity matrices |
| plotConnInfoByArea | Plot dataframe with connectivity info aggregated over sources... |
| plotFractionRecruitingBySource | Produce plots based on the time series of the total fraction... |
| plotFractionRemaining | Plot fraction remaining by age-in-stage |
| plotHistogram | Plot a histogram for a column in a dataframe |
| plotTimeSeriesofIndivValues | Plot time series of a variable for individuals |
| unzipDisMELSResults | Unzips and renames a series of DisMELS results or... |
| writeIndivConns | Write dataframe with individual connectivity results to files... |
