plotFractionRemaining: Plot fraction remaining by age-in-stage

In wStockhausen/wtsDisMELSConn: Functions for dealing with DisMELS IBM model output, including calculating and analyzing connectivity matrices

Description

Function to plot fraction remaining by age-in-stage.

Usage

plotFractionRemaining(dfr = NULL, subsets = NULL,
  lhsTypeInfo = getLifeStageInfo.ATF(), nurseryAlongshoreZones = NULL,
  nurseryDepthZones = NULL, spawningAlongshoreZones = NULL,
  spawningDepthZones = NULL, title = NULL, ggtheme = theme_grey())

Arguments

dfr	- dataframe or filename (or NULL) from call to extractIndivs(...)
subsets	- list with subsets of alongshore spawning zones to include in plots
lhsTypeInfo	- life stage info list for IBM (req'd if onlySuccessful=TRUE or onlyUnsuccessful=TRUE)
nurseryAlongshoreZones	- vector of id's for alongshore nursery zones to include
nurseryDepthZones	- vector of names for depth zones used as nursery areas in the IBM (req'd if onlySuccessful=TRUE)
spawningAlongshoreZones	- vector of id's for alongshore spawning zones to include
spawningDepthZones	- vector of names for depth zones used as spawning areas in the IBM (req'd if onlySuccessful=TRUE)
title	- plot title
ggtheme	- ggplot2 theme for plot

Details

none.

Value

list with elements list(dfr=dfr,dfr.fracs=dfr1,ps=ps)

wStockhausen/wtsDisMELSConn documentation built on May 3, 2019, 7:36 p.m.