extractIndivs.MultipleRuns: Extracts and re-orders a series of DisMELS model results...

In wStockhausen/wtsDisMELSConn: Functions for dealing with DisMELS IBM model output, including calculating and analyzing connectivity matrices

Description

Function to extract and re-order a series of DisMELS model results by individual.

Usage

extractIndivs.MultipleRuns(YYYYs = NULL, MMs = NULL, DDs = NULL,
  lhsTypeInfo = NULL, lhsTypes = NULL,
  successful = "where (end_typeName=\"benthic.juvenile\")",
  nurseryZones = c("NurseryArea_000to050m", "NurseryArea_050to150m"),
  onlySuccessful = TRUE, onlyUnsuccessful = FALSE,
  inpDir.IndivConn = NULL, basename.IndivConn = "IndivConn",
  inpDir.Results = NULL, basename.Results = "Results", outDir = NULL,
  basename.Out = "SuccessfulIndivs", verbose = FALSE)

Arguments

YYYYs	- years to extract (can be NULL)
MMs	- months to extract (can be NULL)
DDs	- days to extract (can be NULL)
lhsTypeInfo	- life stage info list for IBM
lhsTypes	- lhs types to keep for output (NULL = all)
successful	- sql "where" clause to determine final state for individuals regarded as successful
nurseryZones	- vector of nursery area names
onlySuccessful	- flag (T/F) to extract only successful indivs (if TRUE)
onlyUnsuccessful	- flag (T/F) to extract only unsuccessful indivs (if TRUE)
inpDir.IndivConn	- folder with input individual connectivity matrix files
basename.IndivConn	- base name for individual connectivity matrix files
inpDir.Results	- folder with input DisMELS model results files
basename.Results	- base name for DisMELS model results files
outDir	- output folder
basename.Out	- base name for output files
verbose	- flag (T/F) to print debugging info

Details

This function assumes files are named something like 'basenameYYYYMMDD.csv'. Note that at least one of YYYYs, MMs, and DDs must be a non-null vector.

Value

no return value

wStockhausen/wtsDisMELSConn documentation built on May 3, 2019, 7:36 p.m.