plotCM.GG: Plot connectivity matrices using ggplot2

In wStockhausen/wtsDisMELSConn: Functions for dealing with DisMELS IBM model output, including calculating and analyzing connectivity matrices

Description

Function to plot connectivity matrices using ggplot2.

Usage

plotCM.GG(dfr, x = "nursery area", y = "spawning area", z = "Pr(N|S)",
  title = NULL, xLab = x, yLab = y, zLab = z, xMin = NULL,
  xMax = NULL, yMin = NULL, yMax = NULL, zMin = NULL, zMax = NULL,
  facetWrap = NULL, facetGrid = NULL, ncol = 4, reverseX = FALSE,
  reverseY = FALSE, useGrad2 = FALSE, verbose = FALSE)

Arguments

dfr	- dataframe to plot
x	- column name for x values
y	- column name for y values
z	- column name for z values
title	- plot title
xLab	- x axis label
yLab	- y axis label
zLab	- z label
xMin	- x axis minimum
xMax	- x axis maximum
yMin	- y axis minimum
yMax	- y axis maximum
zMin	- z axis minimum
zMax	- z axis maximum
facetWrap	- formula for ggplot2::facet_wrap
facetGrid	- formula for ggplot2::facet_grid
ncol	- number of columns for ggplot2::facet_wrap
reverseX	- flag to reverse x axis
reverseY	- flag to reverse y axis
useGrad2	- flag to use reshape2::scale_fill_gradient2 for fill axis
verbose	- flag (T/F) to print debugging info

Details

none.

Value

a ggplot2 object

wStockhausen/wtsDisMELSConn documentation built on May 3, 2019, 7:36 p.m.