plotCM.matrix: Plot a connectivity matrix from a matrix representation

In wStockhausen/wtsDisMELSConn: Functions for dealing with DisMELS IBM model output, including calculating and analyzing connectivity matrices

Description

Plot a connectivity matrix from a matrix representation.

Usage

plotCM.matrix(prbMat, uNAZs = NULL, uNDZs = NULL, uSAZs = NULL,
  uSDZs = NULL, xlab = "Nursery Areas/Alongshore Zones",
  ylab = "Spawning Areas/Alongshore Zones", zmax = NULL, zmin = 0,
  title = NULL, devtype = "win", cex = 1 * (devtype == "win") + 1.5 *
  (devtype != "win"), colorscale = c("hot", "cold", "coldhot"),
  plotfile = "CM.png", plotsize = c(970, 780))

Arguments

prbMat	- matrix representation of a connectivity matrix (can be NULL)
uNAZs	- character vector of unique nursery alongshore zones
uNDZs	- character vector of unique nursery depth zones
uSAZs	- character vector of unique spawning alongshore zones
uSDZs	- character vector of unique spawning depth zones
xlab	- label for x axis
ylab	- label for y axis
zmax	- max value for color scale
zmin	- min value for color scale
title	- title for plot
devtype	- 'win' or 'png'
cex	- character expansion factor for plot
colorscale	- color scale to use for plot ('hot', 'cold' or 'coldhot')
plotfile	- file to save plot to (if devtype != 'win')
plotsize	- 2 element vector giving plot size in pixels (c(W,H))

Details

deprecated in favor of plotCM.GG.

wStockhausen/wtsDisMELSConn documentation built on May 3, 2019, 7:36 p.m.