assignPairID: Assign an ID to each pair of alleles or patterns.

In wanyuac/GeneMates: Analysing association and physical linkage between bacterial genes

Assign an ID to each pair of alleles or patterns.

Description

This is a generic function that assigns an ID to each pair of object names. For example, a single ID is assigned to two rows in a data frame for associations between patterns (pat_1, pat_2) and (pat_2, pat_1).

Usage

assignPairID(lmms, from = 1, paired.rows = TRUE)

Arguments

lmms	A data frame whose first two columns (named y and x respectively) are used to assign pair IDs.
from	The initial pair ID.
paired.rows:	whether there are only two rows per pair of alleles, each in an inverse direction. Set paired.rows = FALSE to process allele pairs in the data frame lmms.ds[["dif"/"idd"]].

Author(s)

Yu Wan ([e-mail])

Examples

a0 <- assoc[["lmms.pat"]][["dif"]][["h1"]]
a0 <- assignPairID(lmms = a0, from = 1, paired.rows = TRUE)

wanyuac/GeneMates documentation built on Aug. 12, 2022, 7:37 a.m.