getAllelesEarliestAppearance: Get earliest appearance of each allele in a vector

In wanyuac/GeneMates: Analysing association and physical linkage between bacterial genes

Get earliest appearance of each allele in a vector

Description

For a group of alleles, this function returns the earliest occurrence time and country of each allele.

Usage

getAllelesEarliestAppearance(alleles, pam, sam)

Arguments

alleles	A vector of allele names.
pam	A presence-absence matrix of these alleles. It may come from the element pam in the output list of the function ringPlotPAM.
sam	A data frame of sample information. Required columns: Strain, Country, Year_low and Year_up.

Author(s)

Yu Wan ([e-mail])

Examples

emg_1 <- getAllelesEarliestAppearance(alleles = targets, pam = rp_1$pam, sam = sam)

wanyuac/GeneMates documentation built on Aug. 12, 2022, 7:37 a.m.