countNeighbours: Count neighbours per node

In wanyuac/GeneMates: Analysing association and physical linkage between bacterial genes

Count neighbours per node

Description

Count how many neighbours does each node have in a network. The function treats the network as undirected.

Usage

countNeighbours(net, groups = NULL, na = "Mix")

Arguments

net	A Graph object, which can be created by the function mkNetwork.
groups	A data frame mapping alleles to groups, such as genes. The first column stores allele names and the second column stores group information.
na	A character argument specifying the default group in the output.

Value

When groups != NULL, the function returns a list of two data frames for allele-level and gene-level neighbour counts, respectively. Otherwise, a single data frame of allele-level neighbour counts is returned.

Author(s)

Yu Wan ([e-mail])

wanyuac/GeneMates documentation built on Aug. 12, 2022, 7:37 a.m.