corPatternProj: Estimating correlation between an allelic distribution...
In wanyuac/GeneMates: Analysing association and physical linkage between bacterial genes
View source: R/func__corPatternProj.R
corPatternProj R Documentation
Estimating correlation between an allelic distribution pattern and each
projection vector.
Description
This function computes a point-biserial correlation coefficient
between each pattern and each projection vector. It works in a similar way as
the function corCladeProj. The point-biserial correlation coefficient is a
special case of the well-known Pearson correlation coefficient.
Usage
corPatternProj(pat.mat, proj.mat)
Arguments
pat.mat
A uncentred pattern matrix, which is the element alleles$B in
the output of the function lmm or findPhysLink.
proj.mat
A projection matrix, which is the element struc$C$C in the
output of the function lmm or findPhysLink.
Author(s)
Yu Wan (wanyuac@126.com)
Examples
a <- lmm(...)
r <- corPatternProj(pat.mat = a$alleles$B, proj.mat = a$struc$C$C)
wanyuac/GeneMates documentation built on Aug. 12, 2022, 7:37 a.m.
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View source: R/func__corPatternProj.R
| corPatternProj | R Documentation |
Estimating correlation between an allelic distribution pattern and each projection vector.
Description
This function computes a point-biserial correlation coefficient between each pattern and each projection vector. It works in a similar way as the function corCladeProj. The point-biserial correlation coefficient is a special case of the well-known Pearson correlation coefficient.
Usage
corPatternProj(pat.mat, proj.mat)
Arguments
pat.mat |
A uncentred pattern matrix, which is the element alleles$B in the output of the function lmm or findPhysLink. |
proj.mat |
A projection matrix, which is the element struc$C$C in the output of the function lmm or findPhysLink. |
Author(s)
Yu Wan (wanyuac@126.com)
Examples
a <- lmm(...) r <- corPatternProj(pat.mat = a$alleles$B, proj.mat = a$struc$C$C)
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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