getAssocGenePair: Find out rows corresponding to alleles of a given pair of...

In wanyuac/GeneMates: Analysing association and physical linkage between bacterial genes

Find out rows corresponding to alleles of a given pair of genes

Description

This is a little tool function for getting all rows relating to all alleles of two given genes.

Usage

getAssocGenePair(x, map, g1, g2, col1 = "y", col2 = "x")

Arguments

x	A data frame to be subset for the result.
map	A data frame to be searched against, which maps allele names to gene information. There must be two columns named "allele" and "gene".
g1	A string for the first gene name.
g2	A string for the second gene name.
col1	Name or index for the first column of alleles in x. Default: y.
col2	Name or index for the second column of alleles in x. Default: x.

Value

A data frame from x.

Author(s)

Yu Wan ([e-mail])

Examples

getAssocGenePair(x = assoc$mapping, g1 = "StrA_AGly", g2 = "DfrA8_Tmt", col1 = "y", col2 = "x")

wanyuac/GeneMates documentation built on Aug. 12, 2022, 7:37 a.m.