Files in weecology/LDATS
Detect Community-Types from Data and Identify Break Points

.Rbuildignore
.gitignore
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DESCRIPTION
LICENSE
NAMESPACE
R/LDATS_functions.R R/LDATS_package.R R/LDA_functions.R R/connector_functions.R R/data.R R/parallel_tempering_functions.R R/time_series_functions.r README.md
data/rodents.RData
inst/doc/command-line-example.R inst/doc/command-line-example.Rmd
inst/doc/command-line-example.html
inst/extdata/NEWNAME.csv
man/AIC.LDA.Rd man/LDATS.Rd man/LDA_TS.Rd man/LDA_select.Rd man/MTS.Rd man/MTS_prep.Rd man/MTS_set.Rd man/ccmat.Rd man/count_trips.Rd man/doc_weights.Rd man/multinom_chunk.Rd man/multinom_ts.Rd man/parLDA.Rd man/plot.LDA.Rd man/plot.LDA_list.Rd man/prep_changepts.Rd man/prep_temps.Rd man/proposal_dist.Rd man/remove_burnin.Rd man/rodents.Rd man/summarize_cps.Rd previous_work/diagnostics_summary_from_ericas_paper.R
previous_work/downsampling/LDATS_downsampling_rodents.docx
previous_work/downsampling/LDA_analysis.R
previous_work/downsampling/changepoint_models_full.RData
previous_work/downsampling/changepoint_models_quarterly.RData
previous_work/downsampling/changepoint_models_semi.RData
previous_work/downsampling/changepoint_models_yearly.RData
previous_work/downsampling/cp_Full_Data_Set.jpeg
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previous_work/downsampling/cp_SemiYear_Data_Set_1st.jpeg
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previous_work/downsampling/cp_SemiYear_Data_Set_Random1.jpeg
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previous_work/downsampling/cp_SemiYear_Data_Set_Random3.jpeg
previous_work/downsampling/cp_Yearly_Data_Set_1st.jpeg
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previous_work/downsampling/cp_Yearly_Data_Set_Random1.jpeg
previous_work/downsampling/cp_Yearly_Data_Set_Random2.jpeg
previous_work/downsampling/cp_Yearly_Data_Set_Random3.jpeg
previous_work/downsampling/data_and_LDA_ntopic_models.RData
previous_work/downsampling/dataset_functions.r previous_work/downsampling/downsampling_analysis.R previous_work/downsampling/downsampling_functions.R
previous_work/downsampling/n_topics_Full_Data_Set.jpeg
previous_work/downsampling/n_topics_Quarterly_1st.jpeg
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previous_work/downsampling/n_topics_Quarterly_R1.jpeg
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previous_work/downsampling/n_topics_Semi_1st.jpeg
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previous_work/downsampling/old_changepoint_functions.R previous_work/in_development_vignette.R previous_work/package_dev.R
previous_work/paper/.gitignore
previous_work/paper/AIC_model_selection.R previous_work/paper/LDA-distance.R previous_work/paper/LDA_figure_scripts.R
previous_work/paper/MATS_simulation_data.RData
previous_work/paper/MATS_simulation_figure.R
previous_work/paper/Monthly_Landsat_NDVI.csv
previous_work/paper/NDVI_figure.R previous_work/paper/README.md
previous_work/paper/Rodent_table_dat.csv
previous_work/paper/abundance_plots.r previous_work/paper/changepointmodel.R previous_work/paper/create_sim_data.R previous_work/paper/earlier version/AIC_model_selection.R previous_work/paper/earlier version/LDA-distance.R previous_work/paper/earlier version/LDA_analysis.R previous_work/paper/earlier version/LDA_confidence_intervals.R previous_work/paper/earlier version/LDA_figure_scripts.R previous_work/paper/earlier version/abundance_plots.r previous_work/paper/earlier version/changepointmodel.R previous_work/paper/earlier version/create_sim_data.R previous_work/paper/earlier version/explanatory-figure.R previous_work/paper/earlier version/explanatory.pdf previous_work/paper/earlier version/gibbs_functions.R previous_work/paper/earlier version/rodent_LDA_analysis.r previous_work/paper/earlier version/rodent_LDA_analysis_gibbs.R previous_work/paper/earlier version/rodent_euclid_dist_plot.R previous_work/paper/earlier version/simulated_data_LDA.R previous_work/paper/explanatory-figure.R previous_work/paper/pie_plots_for_presentation.R previous_work/paper/plot_populations.R previous_work/paper/preliminaryscripts/LDA_analysis.R previous_work/paper/preliminaryscripts/LDA_confidence_intervals.R previous_work/paper/preliminaryscripts/Thibault_2004_eucliddist.R previous_work/paper/preliminaryscripts/abundance_plots_old.R previous_work/paper/preliminaryscripts/gibbs_functions.R previous_work/paper/preliminaryscripts/rodent_LDA_analysis_gibbs.R previous_work/paper/preliminaryscripts/rodent_abundance_histograms.R previous_work/paper/preliminaryscripts/rodent_euclid_dist_plot.R previous_work/paper/rodent_LDA_analysis.r previous_work/paper/rodent_data_for_LDA.r previous_work/paper/simulated_data_LDA.R previous_work/swap_rates.R previous_work/working_space.R tests/testthat.R tests/testthat/test-01-data-load.R vignettes/rodents-example.Rmd
weecology/LDATS documentation built on Aug. 24, 2018, 8:08 a.m.