Files in weecology/LDATS
Detect Community-Types from Data and Identify Break Points

.Rbuildignore
.gitignore
DESCRIPTION
LDA.pointbreak.Rproj
NAMESPACE
R/AIC_model_selection.R R/LDA-distance.R R/LDA_analysis.R R/LDA_figure_scripts.R R/LDA_functions.R R/changepointmodel.r R/create_sim_data.R R/downsampling_functions.R R/gibbs_functions.R R/rodent_data_for_LDA.r README.md
data/rodent_table.rda
downsampling/LDATS downsampling rodents.docx
downsampling/changepoint_models_full.RData
downsampling/changepoint_models_quarterly.RData
downsampling/changepoint_models_semi.RData
downsampling/changepoint_models_yearly.RData
downsampling/cp_Full_Data_Set.jpeg
downsampling/cp_Quarterly_Data_Set_1st.jpeg
downsampling/cp_Quarterly_Data_Set_2nd.jpeg
downsampling/cp_Quarterly_Data_Set_Random1.jpeg
downsampling/cp_Quarterly_Data_Set_Random2.jpeg
downsampling/cp_Quarterly_Data_Set_Random3.jpeg
downsampling/cp_SemiYear_Data_Set_1st.jpeg
downsampling/cp_SemiYear_Data_Set_3rd.jpeg
downsampling/cp_SemiYear_Data_Set_Random1.jpeg
downsampling/cp_SemiYear_Data_Set_Random2.jpeg
downsampling/cp_SemiYear_Data_Set_Random3.jpeg
downsampling/cp_Yearly_Data_Set_1st.jpeg
downsampling/cp_Yearly_Data_Set_6th.jpeg
downsampling/cp_Yearly_Data_Set_Random1.jpeg
downsampling/cp_Yearly_Data_Set_Random2.jpeg
downsampling/cp_Yearly_Data_Set_Random3.jpeg
downsampling/data_and_LDA_ntopic_models.RData
downsampling/downsampling_analysis.R
downsampling/n_topics_Full_Data_Set.jpeg
downsampling/n_topics_Quarterly_1st.jpeg
downsampling/n_topics_Quarterly_2nd.jpeg
downsampling/n_topics_Quarterly_R1.jpeg
downsampling/n_topics_Quarterly_R2.jpeg
downsampling/n_topics_Quarterly_R3.jpeg
downsampling/n_topics_Semi_1st.jpeg
downsampling/n_topics_Semi_3rd.jpeg
downsampling/n_topics_Semi_R1.jpeg
downsampling/n_topics_Semi_R2.jpeg
downsampling/n_topics_Semi_R3.jpeg
downsampling/n_topics_Yearly_1st.jpeg
downsampling/n_topics_Yearly_6th.jpeg
downsampling/n_topics_Yearly_R1.jpeg
downsampling/n_topics_Yearly_R2.jpeg
downsampling/n_topics_Yearly_R3.jpeg
inst/extdata/Rodent_table_dat.csv
man/Hellinger.Rd man/LDA_analysis_VEM.Rd man/LDA_analysis_gibbs.Rd man/aic_model.Rd man/aic_model_gibbs.Rd man/annual_hist.Rd man/batch_LDA.Rd man/calculate_LDA_distance.Rd man/changepoint_model.Rd man/chpoint_histogram.Rd man/community_composition.Rd man/count_trips.Rd man/cp_hists_file.Rd man/cp_models.Rd man/create_rodent_table.Rd man/create_sim_data_2topic.Rd man/create_sim_data_2topic_nonuniform.Rd man/create_sim_data_3topic.Rd man/downsample.Rd man/find_changepoint_location.Rd man/fit_chunk_non_memoized.Rd man/fit_section.Rd man/get_ll_non_memoized.Rd man/get_ll_non_memoized_plot.Rd man/min_H.Rd man/ntopic_hist_file.Rd man/plot_community_composition.Rd man/plot_community_composition_gg.Rd man/plot_component_communities.Rd man/plot_component_communities_gibbs.Rd man/plot_component_communities_gibbs_credible.Rd man/plot_component_communities_smooth.Rd man/plot_gamma.Rd man/plot_sections.Rd man/repeat_VEM.Rd packagedevcode.R paper/LDA_confidence_intervals.R paper/abundance_plots.r paper/explanatory-figure.R paper/explanatory.pdf paper/rodent_LDA_analysis.r paper/rodent_LDA_analysis_gibbs.R paper/rodent_euclid_dist_plot.R paper/simulated_data_LDA.R working_space.R
weecology/LDATS documentation built on Jan. 22, 2018, 2:27 a.m.