Files in weecology/MATSS

Macroecological Analyses of Time Series Structure

.Rbuildignore

.gitignore

.pre-commit-config.yaml

.travis.yml

.zenodo.json

CODE_OF_CONDUCT.md CONTRIBUTING.md

DESCRIPTION

LICENSE

LICENSE.md

MATSS.Rproj

NAMESPACE

R/MATSS-package.R R/analysis_wrapper.R R/create_MATSS_compendium.R R/get_data_bbs.R R/get_data_biotime.R R/get_data_cowley.R R/get_data_gpdd.R R/get_data_jornada.R R/get_data_maizuru.R R/get_data_mtquad.R R/get_data_portal.R R/get_data_shortgrass_steppe.R R/get_data_vegplots-sdl.R R/get_sanparks_data.R R/plan_analyses.R R/plan_data.R R/plan_references.R R/summary_stats.R R/utils-data-checks.R R/utils-data-processing.R R/utils-data-summarize.R R/utils-matssdata.R R/utils-pipe.R R/utils-retriever-data.R R/utils-testing.R README.Rmd README.md

_pkgdown.yml

data/dragons.rda

deploy_compendium.sh

inst/CITATION

inst/biotime_dataset_info.RDS

inst/extdata/cowleylizards.txt

inst/extdata/cowleysnakes.txt

inst/extdata/gpdd_locations.csv

inst/extdata/sanparks/judithk.815.1-815.1.txt

inst/extdata/sanparks/peggym.1049.1-karoo2008.txt

inst/extdata/sanparks/peggym.1050.1-Karoo2006.txt

inst/extdata/sanparks/peggym.1051.1-Karoo09.txt

inst/extdata/sanparks/peggym.111.1-GGHNPSpecieCodes.txt

inst/extdata/sanparks/peggym.112.1-GGHNPTotals.txt

inst/extdata/sanparks/peggym.114.1-KarooNationalParkCensuscodes.txt

inst/extdata/sanparks/peggym.116.1-KRNPTotals.txt

inst/extdata/subsampled/biotimesql/CITATION

inst/extdata/subsampled/biotimesql/biotimesql_ID_ABUNDANCE.csv

inst/extdata/subsampled/biotimesql/biotimesql_allrawdata.csv

inst/extdata/subsampled/biotimesql/biotimesql_biomass.csv

inst/extdata/subsampled/biotimesql/biotimesql_citation1.csv

inst/extdata/subsampled/biotimesql/biotimesql_contacts.csv

inst/extdata/subsampled/biotimesql/biotimesql_datasets.csv

inst/extdata/subsampled/biotimesql/biotimesql_methods.csv

inst/extdata/subsampled/biotimesql/biotimesql_sample.csv

inst/extdata/subsampled/biotimesql/biotimesql_site.csv

inst/extdata/subsampled/biotimesql/biotimesql_species.csv

inst/extdata/subsampled/breed-bird-survey/CITATION

inst/extdata/subsampled/breed-bird-survey/breed_bird_survey_counts.csv

inst/extdata/subsampled/breed-bird-survey/breed_bird_survey_region_codes.csv

inst/extdata/subsampled/breed-bird-survey/breed_bird_survey_routes.csv

inst/extdata/subsampled/breed-bird-survey/breed_bird_survey_species.csv

inst/extdata/subsampled/breed-bird-survey/breed_bird_survey_weather.csv

inst/extdata/subsampled/mapped-plant-quads-mt/CITATION

inst/extdata/subsampled/mapped-plant-quads-mt/mapped_plant_quads_mt_allrecords_cover.csv

inst/extdata/subsampled/mapped-plant-quads-mt/mapped_plant_quads_mt_allrecords_density.csv

inst/extdata/subsampled/mapped-plant-quads-mt/mapped_plant_quads_mt_species_list.csv

inst/templates/template-README.md

inst/templates/template-Rprofile

inst/templates/template-functions.R inst/templates/template-pipeline.R

inst/templates/template-references.bib

inst/templates/template-report.Rmd man/MATSS.Rd man/analysis_wrapper.Rd man/append_data_citations.Rd man/append_retriever_citation.Rd man/build_analyses_plan.Rd man/build_bbs_datasets_plan.Rd man/build_biotime_datasets_plan.Rd man/build_datasets_plan.Rd man/build_gpdd_datasets_plan.Rd man/build_references_plan.Rd man/build_retriever_datasets_plan.Rd man/check_data_format.Rd man/check_default_data_path.Rd man/collect_analyses.Rd man/combine_bbs_subspecies.Rd man/correct_biotime_dataset.Rd man/create_MATSS_compendium.Rd man/dragons.Rd man/filter_bbs_species.Rd man/filter_bbs_ts.Rd man/get_bbs_route_region_data.Rd man/get_biotime_data.Rd man/get_biotime_dataset_ids.Rd man/get_cowley_lizards.Rd man/get_cowley_snakes.Rd man/get_default_data_path.Rd man/get_effort_from_data.Rd man/get_gpdd_data.Rd man/get_jornada_data.Rd man/get_karoo_data.Rd man/get_kruger_data.Rd man/get_maizuru_data.Rd man/get_mtquad_data.Rd man/get_portal_rodents.Rd man/get_sdl_data.Rd man/get_sgs_data.Rd man/get_times_from_data.Rd man/has_integer_times.Rd man/has_missing_samples.Rd man/install_retriever_data.Rd man/interpolate_missing_samples.Rd man/interpolate_obs.Rd man/invoke.Rd man/is_equitimed.Rd man/make_equitimed.Rd man/make_integer_times.Rd man/normalize_obs.Rd man/pipe.Rd man/prepare_bbs_ts_data.Rd man/prepare_datasets.Rd man/print.matssdata.Rd man/print.matsssummary.Rd man/process_bbs_route_region_data.Rd man/process_biotime_dataset.Rd man/richness.Rd man/summarize_df.Rd man/summarize_vec.Rd man/summary.matssdata.Rd man/temp_autocor.Rd man/to_numeric_vector.Rd man/ts_summary.Rd man/use_default_data_path.Rd tests/testthat.R tests/testthat/setup.R tests/testthat/teardown.R tests/testthat/test-01-data-checking.R tests/testthat/test-02-dataset-processing.R tests/testthat/test-03-retriever-utils.R tests/testthat/test-04-retriever-data.R tests/testthat/test-05-build-plans.R tests/testthat/test-06-build-plans-installed-subsample.R tests/testthat/test-07-analysis-wrapper.R tests/testthat/test-08-summary-stats.R tests/testthat/test-09-summary-stats-utils.R tests/testthat/test-10-compendium-creation.R tests/testthat/test-99-dataset-regressions.R tests/testthat/test-999-installed-subsample-dataset-regressions.R

vignettes/.gitignore

vignettes/MATSS.Rmd vignettes/data-formats.Rmd vignettes/dataset-summary.Rmd vignettes/hipergator-install.Rmd

vignettes/references.bib

weecology/MATSS documentation built on May 15, 2020, 7:03 p.m.