Files in weecology/MATSS
Macroecological Analyses of Time Series Structure

.Rbuildignore
.gitignore
.travis.yml
.zenodo.json
CODE_OF_CONDUCT.md CONTRIBUTING.md
DESCRIPTION
LICENSE
LICENSE.md
MATSS.Rproj
NAMESPACE
R/MATSS-package.R R/analysis_wrapper.R R/build_plans.R R/create_MATSS_compendium.R R/get_bbs_data.R R/get_biotime_data.R R/get_cowley_data.R R/get_gpdd_data.R R/get_jornada_data.R R/get_maizuru_data.R R/get_portal_data.R R/get_retriever_data.R R/get_sanparks_data.R R/get_sgs_data.R R/summary_stats.R R/utils-data-checks.R R/utils-data-summarize.R R/utils-pipe.R R/utils-retriever-data.R README.Rmd README.md
_pkgdown.yml
data/dragons.rda
inst/biotime_dataset_info.RDS
inst/extdata/Maizuru_dominant_sp.csv
inst/extdata/cowleylizards.txt
inst/extdata/cowleysnakes.txt
inst/extdata/gpdd_locations.csv
inst/extdata/jornada_rodents.csv
inst/extdata/sanparks/judithk.815.1-815.1.txt
inst/extdata/sanparks/peggym.1049.1-karoo2008.txt
inst/extdata/sanparks/peggym.1050.1-Karoo2006.txt
inst/extdata/sanparks/peggym.1051.1-Karoo09.txt
inst/extdata/sanparks/peggym.111.1-GGHNPSpecieCodes.txt
inst/extdata/sanparks/peggym.112.1-GGHNPTotals.txt
inst/extdata/sanparks/peggym.114.1-KarooNationalParkCensuscodes.txt
inst/extdata/sanparks/peggym.116.1-KRNPTotals.txt
inst/extdata/shortgrass_steppe_rodents.csv
inst/extdata/subsampled/biotimesql/biotimesql_ID_ABUNDANCE.csv
inst/extdata/subsampled/biotimesql/biotimesql_allrawdata.csv
inst/extdata/subsampled/biotimesql/biotimesql_biomass.csv
inst/extdata/subsampled/biotimesql/biotimesql_citation1.csv
inst/extdata/subsampled/biotimesql/biotimesql_contacts.csv
inst/extdata/subsampled/biotimesql/biotimesql_datasets.csv
inst/extdata/subsampled/biotimesql/biotimesql_methods.csv
inst/extdata/subsampled/biotimesql/biotimesql_sample.csv
inst/extdata/subsampled/biotimesql/biotimesql_site.csv
inst/extdata/subsampled/biotimesql/biotimesql_species.csv
inst/extdata/subsampled/breed-bird-survey/breed_bird_survey_counts.csv
inst/extdata/subsampled/breed-bird-survey/breed_bird_survey_region_codes.csv
inst/extdata/subsampled/breed-bird-survey/breed_bird_survey_routes.csv
inst/extdata/subsampled/breed-bird-survey/breed_bird_survey_species.csv
inst/extdata/subsampled/breed-bird-survey/breed_bird_survey_weather.csv
inst/extdata/subsampled/mapped-plant-quads-mt/mapped_plant_quads_mt_allrecords_cover.csv
inst/extdata/subsampled/mapped-plant-quads-mt/mapped_plant_quads_mt_allrecords_density.csv
inst/extdata/subsampled/mapped-plant-quads-mt/mapped_plant_quads_mt_species_list.csv
inst/templates/template-pipeline.R inst/templates/template-report.Rmd man/MATSS.Rd man/analysis_wrapper.Rd man/build_analyses_plan.Rd man/build_bbs_datasets_plan.Rd man/build_biotime_datasets_plan.Rd man/build_datasets_plan.Rd man/build_gpdd_datasets_plan.Rd man/build_retriever_datasets_plan.Rd man/check_data_format.Rd man/check_default_data_path.Rd man/collect_analyses.Rd man/combine_bbs_subspecies.Rd man/correct_biotime_dataset.Rd man/create_MATSS_compendium.Rd man/dragons.Rd man/filter_bbs_species.Rd man/filter_bbs_ts.Rd man/get_bbs_route_region_data.Rd man/get_biotime_data.Rd man/get_biotime_dataset_ids.Rd man/get_cowley_lizards.Rd man/get_cowley_snakes.Rd man/get_default_data_path.Rd man/get_effort_from_data.Rd man/get_gpdd_data.Rd man/get_jornada_data.Rd man/get_karoo_data.Rd man/get_kruger_data.Rd man/get_maizuru_data.Rd man/get_mtquad_data.Rd man/get_portal_rodents.Rd man/get_sdl_data.Rd man/get_sgs_data.Rd man/get_times_from_data.Rd man/install_retriever_data.Rd man/interpolate_obs.Rd man/maizuru_data.Rd man/normalize_obs.Rd man/pipe.Rd man/prepare_bbs_ts_data.Rd man/process_bbs_route_region_data.Rd man/process_biotime_dataset.Rd man/richness.Rd man/summarize_df.Rd man/summarize_vec.Rd man/temp_autocor.Rd man/to_numeric_vector.Rd man/ts_summary.Rd man/use_default_data_path.Rd process_bbs.R tests/testthat.R tests/testthat/test-01-data-checking.R tests/testthat/test-02-dataset-processing.R tests/testthat/test-03-retriever-utils.R tests/testthat/test-04-retriever-data.R tests/testthat/test-05-build-plans.R tests/testthat/test-06-build-plans-installed-subsample.R tests/testthat/test-07-analysis-wrapper.R tests/testthat/test-08-summary-stats.R tests/testthat/test-09-summary-stats-utils.R tests/testthat/test-99-dataset-regressions.R tests/testthat/test-999-installed-subsample-dataset-regressions.R
vignettes/.gitignore
vignettes/MATSS.Rmd vignettes/data-formats.Rmd vignettes/dataset-summary.Rmd vignettes/hipergator-install.Rmd
weecology/MATSS documentation built on Nov. 7, 2019, 5:31 a.m.