peakStat: Do the univariate and multivariate statistical analysis

In wenbostar/metaX: A flexible and comprehensive software for processing omics data.

Do the univariate and multivariate statistical analysis

Description

Do the univariate and multivariate statistical analysis

Usage

peakStat(para, plsdaPara, doROC = TRUE, saveRds = TRUE, ...)

Arguments

para	A metaXpara object
plsdaPara	A plsDAPara object
doROC	A logical indicates whether to calculate the ROC
saveRds	Boolean, setting the argument to TRUE to save some objects to disk for debug. Only useful for developer. Default is TRUE.
...	Additional parameter
pcaLabel	The label used for PCA score plot, "none","order" and "sample" are supported. Default is "none"

Value

none

An object of metaXpara

Author(s)

Bo Wen [e-mail]

Examples

## Not run: 
para <- new("metaXpara")
pfile <- system.file("extdata/MTBLS79.txt",package = "metaX")
sfile <- system.file("extdata/MTBLS79_sampleList.txt",package = "metaX")
rawPeaks(para) <- read.delim(pfile,check.names = FALSE)
sampleListFile(para) <- sfile
para <- reSetPeaksData(para)
para <- missingValueImpute(para)
ratioPairs(para) <- "S:C"
addValueNorm(para) <- para
plsdaPara <- new("plsDAPara")
res <- peakStat(para,plsdaPara)

## End(Not run)

wenbostar/metaX documentation built on July 4, 2023, 7:50 p.m.