Files in wenbostar/metaX
A flexible and comprehensive software for processing omics data.
DESCRIPTION
NAMESPACE
NEWS
R/MetaboliteIdentify.R
R/ROC.R
R/bootPLSDA.R
R/fselection.R
R/metaX.R
R/model.R
R/network.R
R/omics.R
R/pathwayAnalysis.R
R/powerAnalysis.R
R/prep.R
R/tool.R
README.md
inst/extdata/MTBLS79.txt
inst/extdata/MTBLS79_sampleList.txt
inst/extdata/faahKO_sampleList.txt
inst/extdata/metaX_pipeline.PNG
inst/tool/MetaboliteIdentify.jar
inst/unitTests/test_hasQC.R
inst/unitTests/test_metaXpipe.R
inst/unitTests/test_rfSelection.R
man/addIdentInfo.Rd
man/addValueNorm.Rd
man/autoRemoveOutlier.Rd
man/bootPLSDA.Rd
man/calcAUROC.Rd
man/calcVIP.Rd
man/center.Rd
man/checkPvaluePlot.Rd
man/checkQCPlot.Rd
man/cor.network.Rd
man/createModels.Rd
man/dataClean.Rd
man/dir.case.Rd
man/dir.ctrl.Rd
man/doQCRLSC.Rd
man/featureSelection.Rd
man/filterPeaks.Rd
man/filterQCPeaks.Rd
man/filterQCPeaksByCV.Rd
man/getPeaksTable.Rd
man/getTable.Rd
man/group.bw.Rd
man/group.bw0.Rd
man/group.max.Rd
man/group.minfrac.Rd
man/group.minsamp.Rd
man/group.mzwid.Rd
man/group.mzwid0.Rd
man/group.sleep.Rd
man/hasQC.Rd
man/idres.Rd
man/importDataFromMetaboAnalyst.Rd
man/importDataFromQI.Rd
man/importDataFromXCMS.Rd
man/kfold.Rd
man/makeDirectory.Rd
man/makeMetaboAnalystInput.Rd
man/metaXpara-class.Rd
man/metaXpipe.Rd
man/metaboliteAnnotation.Rd
man/method.Rd
man/missValueImputeMethod.Rd
man/missingValueImpute.Rd
man/myCalcAUROC.Rd
man/myPLSDA.Rd
man/ncomp.Rd
man/normalize.Rd
man/nperm.Rd
man/oplsDAPara-class.Rd
man/outdir.Rd
man/pathwayAnalysis.Rd
man/peakFinder.Rd
man/peakStat.Rd
man/peaksData.Rd
man/permutePLSDA.Rd
man/plotCV.Rd
man/plotCorHeatmap.Rd
man/plotHeatMap.Rd
man/plotIntDistr.Rd
man/plotLoading.Rd
man/plotMissValue.Rd
man/plotNetwork.Rd
man/plotPCA.Rd
man/plotPLSDA.Rd
man/plotPeakBox.Rd
man/plotPeakMeanDist.Rd
man/plotPeakNumber.Rd
man/plotPeakSN.Rd
man/plotPeakSumDist.Rd
man/plotQC.Rd
man/plotQCRLSC.Rd
man/plotROC.Rd
man/plotTIC.Rd
man/plotTreeMap.Rd
man/plsDAPara-class.Rd
man/powerAnalyst.Rd
man/preProcess.Rd
man/prefix.Rd
man/qcRlscSpan.Rd
man/ratioPairs.Rd
man/rawPeaks.Rd
man/reSetPeaksData.Rd
man/removeSample.Rd
man/retcor.method.Rd
man/retcor.plottype.Rd
man/retcor.profStep.Rd
man/runOPLSDA.Rd
man/runPLSDA.Rd
man/sampleListFile.Rd
man/scale.Rd
man/selectBestComponent.Rd
man/svrNormalize.Rd
man/t.Rd
man/transformation.Rd
man/validation.Rd
man/xcmsSet.fitgauss.Rd
man/xcmsSet.fwhm.Rd
man/xcmsSet.integrate.Rd
man/xcmsSet.max.Rd
man/xcmsSet.method.Rd
man/xcmsSet.mzCenterFun.Rd
man/xcmsSet.mzdiff.Rd
man/xcmsSet.nSlaves.Rd
man/xcmsSet.noise.Rd
man/xcmsSet.peakwidth.Rd
man/xcmsSet.polarity.Rd
man/xcmsSet.ppm.Rd
man/xcmsSet.prefilter.Rd
man/xcmsSet.profparam.Rd
man/xcmsSet.sleep.Rd
man/xcmsSet.snthresh.Rd
man/xcmsSet.step.Rd
man/xcmsSet.verbose.columns.Rd
man/xcmsSetObj.Rd
man/zero2NA.Rd
tests/runTests.R
vignettes/metaX.Rnw
vignettes/metaX.bib
vignettes/metaX.pdf
