API for wenbostar/metaX
A flexible and comprehensive software for processing omics data.

Global functions
.SSE Source code
.glog Source code
.jglog Source code
HotE Source code
addIdentInfo Man page
addValueNorm<- Man page
autoRemoveOutlier Man page
batchCorrect Source code
bootPLSDA Man page Source code
calcAUROC Man page
calcCorBetweenProteinAndRNA Source code
calcMeanCurve Source code
calcRatio Source code
calcVIP Man page
calculateCI Source code
center<- Man page
checkPvaluePlot Man page
checkQCPlot Man page
class2ind Source code
computeHL Source code
cor.network Man page Source code
countMissingValue Source code
createModels Man page Source code
dataClean Man page
dir.case<- Man page
dir.ctrl<- Man page
doQCRLSC Man page
doglog Source code
featureSelection Man page Source code
filterPeaks Man page
filterQCPeaks Man page
filterQCPeaksByCV Man page
getPeaksTable Man page
getTable Man page
group.bw0<- Man page
group.bw<- Man page
group.max<- Man page
group.minfrac<- Man page
group.minsamp<- Man page
group.mzwid0<- Man page
group.mzwid<- Man page
group.sleep<- Man page
hasQC Man page
idres<- Man page
importDataFromMetaboAnalyst Man page
importDataFromQI Man page
importDataFromXCMS Man page
kfold<- Man page
logTransform Source code
makeDirectory Man page
makeMetaboAnalystInput Man page
metaColors Source code
metaXpara-class Man page
metaXpipe Man page
metaboliteAnnotation Man page Source code
method<- Man page
missValueImputeMethod<- Man page
missingValueImpute Man page
modelEval Source code
myCalcAUROC Man page Source code
myPLSDA Man page
mybootPLSDA Source code
ncomp<- Man page
normalize Man page
nperm<- Man page
oplsDAPara-class Man page
outdir<- Man page
pathwayAnalysis Man page Source code
peakFinder Man page
peakStat Man page
peaksData<- Man page
permutePLSDA Man page Source code
plotCV Man page
plotCorHeatmap Man page Source code
plotHeatMap Man page
plotIntDistr Man page
plotLoading Man page
plotMissValue Man page
plotNetwork Man page Source code
plotPCA Man page
plotPLSDA Man page
plotPeakBox Man page
plotPeakMeanDist Man page
plotPeakNumber Man page
plotPeakSN Man page
plotPeakSumDist Man page
plotQC Man page
plotQCRLSC Man page
plotROC Man page Source code
plotTIC Man page
plotTreeMap Man page
plsDAPara-class Man page
powerAnalyst Man page Source code
preProcess Man page Source code
prefix<- Man page
qcRlscSpan<- Man page
ratioPairs<- Man page
rawPeaks<- Man page
reSetPeaksData Man page
removeSample Man page
retcor.method<- Man page
retcor.plottype<- Man page
retcor.profStep<- Man page
rfSelection Source code
runOPLSDA Man page Source code
runPLSDA Man page Source code
run_PLSDA Source code
sampleListFile<- Man page
scale<- Man page
selectBestComponent Man page Source code
splitData Source code
svmRadialSelection Source code
svrNormalize Man page Source code
t<- Man page
transformation Man page Source code
validation<- Man page
xcmsSet.fitgauss<- Man page
xcmsSet.fwhm<- Man page
xcmsSet.integrate<- Man page
xcmsSet.max<- Man page
xcmsSet.method<- Man page
xcmsSet.mzCenterFun<- Man page
xcmsSet.mzdiff<- Man page
xcmsSet.nSlaves<- Man page
xcmsSet.noise<- Man page
xcmsSet.peakwidth<- Man page
xcmsSet.polarity<- Man page
xcmsSet.ppm<- Man page
xcmsSet.prefilter<- Man page
xcmsSet.profparam<- Man page
xcmsSet.sleep<- Man page
xcmsSet.snthresh<- Man page
xcmsSet.step<- Man page
xcmsSet.verbose.columns<- Man page
xcmsSetObj<- Man page
zero2NA Man page
wenbostar/metaX documentation built on June 5, 2020, 10:14 a.m.