plotCV: Plot the CV distribution of peaks in each group

In wenbostar/metaX: A flexible and comprehensive software for processing omics data.

Plot the CV distribution of peaks in each group

Description

Plot the CV distribution of peaks in each group.

Usage

plotCV(x, valueID = "value", ...)

Arguments

x	A metaXpara object
valueID	The name of the column that used as peak intensity
...	Additional parameter

Value

none

Author(s)

Bo Wen [e-mail]

Examples

library(faahKO)
xset <- group(faahko)
xset <- retcor(xset)
xset <- group(xset)
xset <- fillPeaks(xset)
peaksData <- as.data.frame(groupval(xset,"medret",value="into"))
peaksData$name <- row.names(peaksData)
para <- new("metaXpara")
rawPeaks(para) <- peaksData
sampleListFile(para) <- system.file("extdata/faahKO_sampleList.txt", 
    package = "metaX")
para <- reSetPeaksData(para)
plotCV(para)

wenbostar/metaX documentation built on July 4, 2023, 7:50 p.m.