OutFLANKResultsPlotter: This function takes the output of OutFLANK as input with the...

In whitlock/OutFLANK: Fst outliers with trimming

Description

#'@title Plot the distributions of Fst from OutFLANK output

Usage

OutFLANKResultsPlotter(OFoutput, withOutliers = TRUE, NoCorr = TRUE,
  Hmin = 0.1, binwidth = 0.005, Zoom = FALSE, RightZoomFraction = 0.05,
  titletext = NULL)

Arguments

OFoutput	The output of the function OutFLANK()
withOutliers	Determines whether the loci marked as outliers (with $OutlierFlag) are included in the histogram.
NoCorr	Plots the distribution of FSTNoCorr when TRUE. Recommended, because this is the data used by OutFLANK to infer the distribution.
Hmin	The minimum heterozygosity required before including a locus in the plot.
binwidth	The width of bins in the histogram.
Zoom	If Zoom is set to TRUE, then the graph will zoom in on the right tail of the distribution (based on argument RightZoomFraction)
RightZoomFraction	Used when Zoom = TRUE. Defines the proportion of the distribution to plot.
titletext	Allows a test string to be printed as a title on the graph

Value

The function returns a plot, containing a histogram of Fst with the inferred neutral distribution superimposed.

See the read me file at github.

whitlock/OutFLANK documentation built on Nov. 5, 2019, 12:09 p.m.