WC_FST_FiniteSample_Diploids_2Alleles: FST calculation for biallelic diploid data

In whitlock/OutFLANK: Fst outliers with trimming

Description

Calculates FST with correction for local sample sizes, for diploid biallelic data.

Usage

WC_FST_FiniteSample_Diploids_2Alleles(Sample_Mat)

Arguments

Sample_Mat

This is an array with a row for each population, and three values per row: Number of Homozygotes of one type, number of heterozygotes, number of homozygotes of other type.

Value

Returns a list of values related to FST:

• He: the expected heterozygosity of the locus

• FST: Fst (with sample size correction)

• T1: The numerator of the Fst calculation (a from Weir and Cockerham 1984)

• T2NoCorr: The denominator of the Fst calculation (a+b+c from Weir and Cockerham 1984)

whitlock/OutFLANK documentation built on Nov. 5, 2019, 12:09 p.m.