WC_FST_FiniteSample_Haploids_2AllelesB_MCW: FST calculation for biallelic haploid data
In whitlock/OutFLANK: Fst outliers with trimming
Description
Usage
Arguments
Value
View source: R/FST functions.R
Description
Calculates FST with correction for local sample sizes, for haploid biallelic data. Based on Weir (1996 - Genetic Data Analysis II)
Usage
1
WC_FST_FiniteSample_Haploids_2AllelesB_MCW(AllCounts)
Arguments
AllCounts
This is an array with a row for each population, and two values per row: Number of alleles in the sample of one type, number of alleles of other type.
Value
Returns a list of values related to FST:
He: the expected heterozygosity of the locus
p_ave: the average allele frequency
FST: Fst (with sample size correction)
T1: The numerator of the Fst calculation
T2: The denominator of the Fst calculation
whitlock/OutFLANK documentation built on Nov. 5, 2019, 12:09 p.m.
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Description Usage Arguments Value
View source: R/FST functions.R
Description
Calculates FST with correction for local sample sizes, for haploid biallelic data. Based on Weir (1996 - Genetic Data Analysis II)
Usage
1 | WC_FST_FiniteSample_Haploids_2AllelesB_MCW(AllCounts)
|
Arguments
AllCounts |
This is an array with a row for each population, and two values per row: Number of alleles in the sample of one type, number of alleles of other type. |
Value
Returns a list of values related to FST:
He: the expected heterozygosity of the locus
p_ave: the average allele frequency
FST: Fst (with sample size correction)
T1: The numerator of the Fst calculation
T2: The denominator of the Fst calculation
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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