WC_FST_Diploids_2Alleles: FST calculation for biallelic diploid data
In whitlock/OutFLANK: Fst outliers with trimming
Description
Usage
Arguments
Value
Description
Calculates FST both with and without correction for local sample sizes, for diploid biallelic data. Based on Weir and Cockerham (1984)
Usage
1
WC_FST_Diploids_2Alleles(Sample_Mat)
Arguments
Sample_Mat
This is an array with a row for each population. There should be three columns, with the numbers of individuals from that population which are homozygotes for one allele, heterozygotes, and homozygotes for the other allele.
Value
Returns a list of values related to FST:
He: The expected heterozygosity of the locus
FST: Fst (with sample size correction)
T1: The numerator of the Fst calculation
T2: The denominator of the Fst calculation
FSTNoCorr: Fst (without sample size correction)
T1NoCorr: The numerator of the Fst calculation without sample size correction
T2NoCorr: The denominator of the Fst calculation without sample size correction
meanAlleleFreq: The mean allele frequency over all populations for this locus
whitlock/OutFLANK documentation built on Nov. 5, 2019, 12:09 p.m.
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Description Usage Arguments Value
Description
Calculates FST both with and without correction for local sample sizes, for diploid biallelic data. Based on Weir and Cockerham (1984)
Usage
1 | WC_FST_Diploids_2Alleles(Sample_Mat)
|
Arguments
Sample_Mat |
This is an array with a row for each population. There should be three columns, with the numbers of individuals from that population which are homozygotes for one allele, heterozygotes, and homozygotes for the other allele. |
Value
Returns a list of values related to FST:
He: The expected heterozygosity of the locus
FST: Fst (with sample size correction)
T1: The numerator of the Fst calculation
T2: The denominator of the Fst calculation
FSTNoCorr: Fst (without sample size correction)
T1NoCorr: The numerator of the Fst calculation without sample size correction
T2NoCorr: The denominator of the Fst calculation without sample size correction
meanAlleleFreq: The mean allele frequency over all populations for this locus
R Package Documentation
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We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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