pTwoSidedFromChiSq: P-values for test of neutrality

In whitlock/OutFLANK: Fst outliers with trimming

Description

Calculates P-values for test of neutrality for a list of loci, using input of an inferred degrees of freedom for the chi-square and mean Neutral FST

Usage

pTwoSidedFromChiSq(x, df)

Arguments

DataList	A data frame with a row for each locus, that includes at least a column for $FSTNoCorr and $He.
Fstbar	Mean Fst (without sample size correction) as inferred from neutral loci or OutFLank
dfInferred	The inferred degrees of freedom of the chi-square distribution describing neutral Fst values.
Hmin	Minimum heterozygosity (H) to exclude low H alleles

Value

Returns a data frame with the original data, and two new columns appended:

• $pvalues the p-value for a locus, with extremely large values of FST near 0

• $pvaluesRightTail the one-sided (right tail) p-value for a locus

#@export

whitlock/OutFLANK documentation built on Nov. 5, 2019, 12:09 p.m.