get_exp_likelihoods: get the single cell expression likelihoods

In whtns/numbat: Haplotype-Aware CNV Analysis from scRNA-Seq

get the single cell expression likelihoods

Description

get the single cell expression likelihoods

Usage

get_exp_likelihoods(
  exp_counts,
  diploid_chroms = NULL,
  use_loh = FALSE,
  depth_obs = NULL,
  mu = NULL,
  sigma = NULL
)

Arguments

exp_counts	dataframe Single-cell expression counts CHROM, seg, cnv_state, gene, Y_obs, lambda_ref
diploid_chroms	character vector Known diploid chromosomes
use_loh	logical Whether to include CNLOH regions in baseline

Value

dataframe Single-cell CNV likelihood scores

whtns/numbat documentation built on Nov. 8, 2022, 10:48 a.m.