get_exp_post: compute single-cell expression posteriors

In whtns/numbat: Haplotype-Aware CNV Analysis from scRNA-Seq

compute single-cell expression posteriors

Description

compute single-cell expression posteriors

Usage

get_exp_post(
  segs_consensus,
  count_mat,
  gtf,
  lambdas_ref,
  sc_refs = NULL,
  diploid_chroms = NULL,
  use_loh = NULL,
  segs_loh = NULL,
  ncores = 30,
  verbose = TRUE,
  debug = FALSE
)

Arguments

segs_consensus	dataframe Consensus segments
count_mat	dgCMatrix gene expression count matrix
gtf	dataframe transcript gtf
lambdas_ref	matrix Reference expression profiles

Value

dataframe Expression posteriors

whtns/numbat documentation built on Nov. 8, 2022, 10:48 a.m.