perform_nni | R Documentation |
Maximum likelihood tree search via NNI
perform_nni( tree_init, P, max_iter = 100, eps = 0.01, ncores = 1, verbose = TRUE )
tree_init |
phylo Intial tree |
P |
matrix Genotype probability matrix |
max_iter |
integer Maximum number of iterations |
eps |
numeric Tolerance threshold in likelihood difference for stopping |
ncores |
integer Number of cores to use |
verbose |
logical Verbosity |
multiPhylo List of trees corresponding to the rearrangement steps
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